||5R21CA175979-02 Interpret this number
||International Agency For Res On Cancer
||Two Hit Gene Mapping in Renal Cell Carcinoma
DESCRIPTION (provided by applicant): The germ-line genetic variants identified thus far generally explain only part of the predicted genetic risk for most cancers, including renal cell carcinoma (RCC). A component of the remaining risk may be explained by functionally consequent genetic variants that are individually very rare (or private). The contribution that thi spectrum of genetic variation makes to susceptibility to RCC remains unexplored. Strategies that allow for agnostic, genome-wide assessment of such variants are likely to require very important sample sizes for adequate statistical power. In addition to the large cost, such study approaches may not be practical for rare cancers due to the lack of sufficiently large bio-repositories. Unusual frequencies of "two-hit" mutation events (one mutation in the germ-line, and a second, somatic mutation in the same individual) may be able to map genes involved in RCC cancer susceptibility. Within the exceptional IARC RCC bio-repository, we propose to use this "two-hit mapping" approach in a discovery and replication study design to identify genes involved in genetic susceptibility to RCC acting via Knudson's two hit model.
Needlestack: an ultra-sensitive variant caller for multi-sample next generation sequencing data.
, Avogbe P.H.
, Gabriel A.A.G.
, Alcala N.
, Leblay N.
, Voegele C.
, Vallée M.
, Chopard P.
, Chabrier A.
, Abedi-Ardekani B.
, et al.
NAR genomics and bioinformatics, 2020 Jun; 2(2), p. lqaa021.