Grant Details
Grant Number: |
1U01CA182940-01 Interpret this number |
Primary Investigator: |
Luebeck, Georg |
Organization: |
Fred Hutchinson Cancer Research Center |
Project Title: |
Esophageal Cancer From Cells to Population: a Multiscale Approach |
Fiscal Year: |
2013 |
Abstract
DESCRIPTION (provided by applicant): Esophageal Cancer from Cells to Population: A Multiscale Approach The goal of the proposed research is to reduce the burden of esophageal adenocarcinoma (EAC) by optimizing surveillance of patients with Barrett's esophagus (BE) using cutting-edge endoscopic imaging and advanced epigenetic profiling of neoplastic tissues in combination with standard endoscopic techniques. To accomplish this goal we will establish a multidisciplinary collaboration between cancer biologists, epidemiologists, clinicians and computational and mathematical modelers. This research team will develop a multiscale modeling framework that synthesizes and integrates data generated from diverse sources and at different scales to provide a coherent and informative portrayal of the natural history of EAC. Simulation models of EAC actively supported by the NCI's CISNET (U01 CA152926) and data from the Barrett's Esophagus Translational Research Network (BETRNet, U54 CA163060) will serve as the foundation for a new biologically-motivated Multiscale Esophageal Adenocarcinoma Model (MEMo). This new model will be informed by data that span numerous scales including: molecular level DNA methylation data, cellular level volumetric laser endomicroscopy (VLE) data, patient level endoscopic surveillance data, and population level cancer registry SEER data. We will use MEMo as an analytic tool to assess the clinical effectiveness of BE surveillance protocols for early esophageal neoplasia detection and prevention. By the end of the award period, we will have an improved and more comprehensive understanding of the biological and natural history of EAC that provides a platform to design better strategies to control its population burden.
Publications
Novel DNA Methylation Biomarker Panel for Detection of Esophageal Adenocarcinoma and High-grade Dysplasia.
Authors: Yu M.
, Moinova H.R.
, Willbanks A.
, Cannon V.K.
, Wang T.
, Carter K.
, Kaz A.
, Reddi D.
, Inadomi J.
, Luebeck G.
, et al.
.
Source: Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research, 2022-06-15 00:00:00.0; , .
EPub date: 2022-06-15 00:00:00.0.
PMID: 35705525
Related Citations
Optimal Timing for Cancer Screening and Adaptive Surveillance Using Mathematical Modeling.
Authors: Curtius K.
, Dewanji A.
, Hazelton W.D.
, Rubenstein J.H.
, Luebeck G.E.
.
Source: Cancer Research, 2021-02-15 00:00:00.0; 81(4), p. 1123-1134.
EPub date: 2020-12-08 00:00:00.0.
PMID: 33293425
Related Citations
Epigenetic Alterations in the Gastrointestinal Tract: Current and Emerging Use for Biomarkers of Cancer.
Authors: Grady W.M.
, Yu M.
, Markowitz S.D.
.
Source: Gastroenterology, 2021 Feb; 160(3), p. 690-709.
EPub date: 2020-12-03 00:00:00.0.
PMID: 33279516
Related Citations
Barretts Esophagus and Esophageal Adenocarcinoma Biomarkers.
Authors: Grady W.M.
, Yu M.
, Markowitz S.D.
, Chak A.
.
Source: Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology, 2020-10-22 00:00:00.0; , .
EPub date: 2020-10-22 00:00:00.0.
PMID: 33093162
Related Citations
The evolution of metapopulation dynamics and the number of stem cells in intestinal crypts and other tissue structures in multicellular bodies.
Authors: Birtwell D.
, Luebeck G.
, Maley C.C.
.
Source: Evolutionary Applications, 2020 Aug; 13(7), p. 1771-1783.
EPub date: 2020-08-12 00:00:00.0.
PMID: 32821281
Related Citations
Epigenetic aging: more than just a clock when it comes to cancer.
Authors: Yu M.
, Hazelton W.D.
, Luebeck G.E.
, Grady W.M.
.
Source: Cancer Research, 2019-11-06 00:00:00.0; , .
EPub date: 2019-11-06 00:00:00.0.
PMID: 31694907
Related Citations
Outcome of endoscopic mucosal resection in Barrett's esophagus determined by systematic quantification of epithelial glands using volumetric laser endomicroscopy.
Authors: Kamboj A.K.
, Kahn A.
, Sawas T.
, Lutzke L.S.
, Iyer P.G.
, Wang K.K.
, Leggett C.L.
.
Source: Gastrointestinal Endoscopy, 2019 04; 89(4), p. 701-708.e1.
EPub date: 2018-10-16 00:00:00.0.
PMID: 30339951
Related Citations
Implications of epigenetic drift in colorectal neoplasia.
Authors: Luebeck G.E.
, Hazelton W.D.
, Curtius K.
, Maden S.K.
, Yu M.
, Carter K.T.
, Burke W.
, Lampe P.D.
, Li C.I.
, Ulrich C.M.
, et al.
.
Source: Cancer Research, 2018-10-05 00:00:00.0; , .
EPub date: 2018-10-05 00:00:00.0.
PMID: 30291105
Related Citations
Volumetric laser endomicroscopy interpretation and feature analysis in dysplastic Barrett's esophagus.
Authors: Kamboj A.K.
, Kahn A.
, Wolfsen H.C.
, Trindade A.J.
, Ganguly E.K.
, Otaki F.
, Chan D.
, Zakko L.
, Visrodia K.
, Lutzke L.
, et al.
.
Source: Journal Of Gastroenterology And Hepatology, 2018 Oct; 33(10), p. 1761-1765.
EPub date: 2018-05-07 00:00:00.0.
PMID: 29633412
Related Citations
Smokeless Tobacco and Cigar and/or Pipe Are Risk Factors for Barrett Esophagus in Male Patients With Gastroesophageal Reflux Disease.
Authors: Westra W.M.
, Lutzke L.S.
, Mostafavi N.S.
, Roes A.L.
, Calpe S.
, Wang K.K.
, Krishnadath K.K.
.
Source: Mayo Clinic Proceedings, 2018 09; 93(9), p. 1282-1289.
PMID: 30193675
Related Citations
Subtypes of Barrett's oesophagus and oesophageal adenocarcinoma based on genome-wide methylation analysis.
Authors: Yu M.
, Maden S.K.
, Stachler M.
, Kaz A.M.
, Ayers J.
, Guo Y.
, Carter K.T.
, Willbanks A.
, Heinzerling T.J.
, O'Leary R.M.
, et al.
.
Source: Gut, 2018-06-08 00:00:00.0; , .
EPub date: 2018-06-08 00:00:00.0.
PMID: 29884612
Related Citations
Cryotherapy for persistent Barrett's esophagus after radiofrequency ablation: a systematic review and meta-analysis.
Authors: Visrodia K.
, Zakko L.
, Singh S.
, Leggett C.L.
, Iyer P.G.
, Wang K.K.
.
Source: Gastrointestinal Endoscopy, 2018 Jun; 87(6), p. 1396-1404.e1.
EPub date: 2018-02-22 00:00:00.0.
PMID: 29476849
Related Citations
Editorial: The Effect of Bias on Estimation of Improved Survival After Diagnosis of Barrett's Esophagus.
Authors: Zakko L.
, Visrodia K.
, Wang K.K.
, Iyer P.G.
.
Source: The American Journal Of Gastroenterology, 2017 Aug; 112(8), p. 1265-1266.
PMID: 28766563
Related Citations
Screening and Preventive Strategies in Esophagogastric Cancer.
Authors: Zakko L.
, Lutzke L.
, Wang K.K.
.
Source: Surgical Oncology Clinics Of North America, 2017 Apr; 26(2), p. 163-178.
PMID: 28279462
Related Citations
Cost-Effectiveness of Screening Patients with Gastroesophageal Reflux Disease for Barrett's Esophagus With a Minimally Invasive Cell Sampling Device.
Authors: Heberle C.R.
, Omidvari A.H.
, Ali A.
, Kroep S.
, Kong C.Y.
, Inadomi J.M.
, Rubenstein J.H.
, Tramontano A.C.
, Dowling E.C.
, Hazelton W.D.
, et al.
.
Source: Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association, 2017-02-23 00:00:00.0; , .
EPub date: 2017-02-23 00:00:00.0.
PMID: 28238953
Related Citations
Breath Testing for Barrett's Esophagus Using Exhaled Volatile Organic Compound Profiling With an Electronic Nose Device.
Authors: Chan D.K.
, Zakko L.
, Visrodia K.H.
, Leggett C.L.
, Lutzke L.S.
, Clemens M.A.
, Allen J.D.
, Anderson M.A.
, Wang K.K.
.
Source: Gastroenterology, 2017 01; 152(1), p. 24-26.
EPub date: 2016-11-05 00:00:00.0.
PMID: 27825962
Related Citations
Identification of a key role of widespread epigenetic drift in Barrett's esophagus and esophageal adenocarcinoma.
Authors: Luebeck E.G.
, Curtius K.
, Hazelton W.D.
, Maden S.
, Yu M.
, Thota P.N.
, Patil D.T.
, Chak A.
, Willis J.E.
, Grady W.M.
.
Source: Clinical Epigenetics, 2017; 9, p. 113.
EPub date: 2017-10-16 00:00:00.0.
PMID: 29046735
Related Citations
Multi-scale Modeling in Clinical Oncology: Opportunities and Barriers to Success.
Authors: Yankeelov T.E.
, An G.
, Saut O.
, Luebeck E.G.
, Popel A.S.
, Ribba B.
, Vicini P.
, Zhou X.
, Weis J.A.
, Ye K.
, et al.
.
Source: Annals Of Biomedical Engineering, 2016 Sep; 44(9), p. 2626-41.
PMID: 27384942
Related Citations
MicroRNA Expression Signatures During Malignant Progression From Barrett's Esophagus.
Authors: Bansal A.
, Gupta V.
, Wang K.
.
Source: Journal Of Cellular Biochemistry, 2016 Jun; 117(6), p. 1288-95.
PMID: 26808728
Related Citations
Comparative diagnostic performance of volumetric laser endomicroscopy and confocal laser endomicroscopy in the detection of dysplasia associated with Barrett's esophagus.
Authors: Leggett C.L.
, Gorospe E.C.
, Chan D.K.
, Muppa P.
, Owens V.
, Smyrk T.C.
, Anderson M.
, Lutzke L.S.
, Tearney G.
, Wang K.K.
.
Source: Gastrointestinal Endoscopy, 2016 May; 83(5), p. 880-888.e2.
PMID: 26344884
Related Citations
Predicting Barrett's Esophagus in Families: An Esophagus Translational Research Network (BETRNet) Model Fitting Clinical Data to a Familial Paradigm.
Authors: Sun X.
, Elston R.C.
, Barnholtz-Sloan J.S.
, Falk G.W.
, Grady W.M.
, Faulx A.
, Mittal S.K.
, Canto M.
, Shaheen N.J.
, Wang J.S.
, et al.
.
Source: Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology, 2016 05; 25(5), p. 727-35.
PMID: 26929243
Related Citations
A Molecular Clock Infers Heterogeneous Tissue Age Among Patients with Barrett's Esophagus.
Authors: Curtius K.
, Wong C.J.
, Hazelton W.D.
, Kaz A.M.
, Chak A.
, Willis J.E.
, Grady W.M.
, Luebeck E.G.
.
Source: Plos Computational Biology, 2016 05; 12(5), p. e1004919.
PMID: 27168458
Related Citations
Diagnosing gastrointestinal illnesses using fecal headspace volatile organic compounds.
Authors: Chan D.K.
, Leggett C.L.
, Wang K.K.
.
Source: World Journal Of Gastroenterology, 2016-01-28 00:00:00.0; 22(4), p. 1639-49.
PMID: 26819529
Related Citations
Global Dna Methylation Patterns In Barrett's Esophagus, Dysplastic Barrett's, And Esophageal Adenocarcinoma Are Associated With Bmi, Gender, And Tobacco Use
Authors: Kaz A.M.
, Wong C.J.
, Varadan V.
, Willis J.E.
, Chak A.
, Grady W.M.
.
Source: Clinical Epigenetics, 2016; 8, p. 111.
PMID: 27795744
Related Citations
Methylated B3GAT2 and ZNF793 Are Potential Detection Biomarkers for Barrett's Esophagus.
Authors: Yu M.
, O'Leary R.M.
, Kaz A.M.
, Morris S.M.
, Carter K.T.
, Chak A.
, Chandar A.
, Willis J.E.
, Moinova H.R.
, Markowitz S.D.
, et al.
.
Source: Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology, 2015 Dec; 24(12), p. 1890-7.
PMID: 26545406
Related Citations
The Role of Gastroesophageal Reflux and Other Factors during Progression to Esophageal Adenocarcinoma.
Authors: Hazelton W.D.
, Curtius K.
, Inadomi J.M.
, Vaughan T.L.
, Meza R.
, Rubenstein J.H.
, Hur C.
, Luebeck E.G.
.
Source: Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology, 2015 Jul; 24(7), p. 1012-23.
PMID: 25931440
Related Citations
Genetic and Epigenetic Alterations in Barrett's Esophagus and Esophageal Adenocarcinoma.
Authors: Kaz A.M.
, Grady W.M.
, Stachler M.D.
, Bass A.J.
.
Source: Gastroenterology Clinics Of North America, 2015 Jun; 44(2), p. 473-89.
PMID: 26021206
Related Citations
Screening for Barrett's Esophagus.
Authors: di Pietro M.
, Chan D.
, Fitzgerald R.C.
, Wang K.K.
.
Source: Gastroenterology, 2015 May; 148(5), p. 912-23.
PMID: 25701083
Related Citations
A Multiscale Model Evaluates Screening for Neoplasia in Barrett's Esophagus.
Authors: Curtius K.
, Hazelton W.D.
, Jeon J.
, Luebeck E.G.
.
Source: Plos Computational Biology, 2015 May; 11(5), p. e1004272.
PMID: 26001209
Related Citations
Cost considerations in implementing a screening and surveillance strategy for Barrett's oesophagus.
Authors: Inadomi J.M.
.
Source: Best Practice & Research. Clinical Gastroenterology, 2015 Feb; 29(1), p. 51-63.
PMID: 25743456
Related Citations
MethyLight droplet digital PCR for detection and absolute quantification of infrequently methylated alleles.
Authors: Yu M.
, Carter K.T.
, Makar K.W.
, Vickers K.
, Ulrich C.M.
, Schoen R.E.
, Brenner D.
, Markowitz S.D.
, Grady W.M.
.
Source: Epigenetics, 2015; 10(9), p. 803-9.
PMID: 26186366
Related Citations
Prediction of response to endoscopic therapy of Barrett's dysplasia by using genetic biomarkers.
Authors: Timmer M.R.
, Brankley S.M.
, Gorospe E.C.
, Sun G.
, Lutzke L.S.
, Iyer P.G.
, Halling K.C.
, Krishnadath K.K.
, Wang K.K.
.
Source: Gastrointestinal Endoscopy, 2014 Dec; 80(6), p. 984-91.
PMID: 25085335
Related Citations
Barrett's Esophagus Translational Research Network (BETRNet): the pivotal role of multi-institutional collaboration in esophageal adenocarcinoma research.
Authors: Abrams J.A.
, Appelman H.D.
, Beer D.G.
, Berry L.D.
, Chak A.
, Falk G.W.
, Fitzgerald R.C.
, Ginsberg G.G.
, Grady W.M.
, Joshi B.P.
, et al.
.
Source: Gastroenterology, 2014 Jun; 146(7), p. 1586-90.
PMID: 24768332
Related Citations
Volumetric laser endomicroscopy detects subsquamous Barrett's adenocarcinoma.
Authors: Leggett C.L.
, Gorospe E.
, Owens V.L.
, Anderson M.
, Lutzke L.
, Wang K.K.
.
Source: The American Journal Of Gastroenterology, 2014 Feb; 109(2), p. 298-9.
PMID: 24496431
Related Citations