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Grant Details

Grant Number: 2R01CA090998-06A2 Interpret this number
Primary Investigator: Leblanc, Michael
Organization: Fred Hutchinson Cancer Research Center
Project Title: Statistical Methods for Clinical Studies
Fiscal Year: 2008


Abstract

DESCRIPTION (provided by applicant): PROJECT SUMMARY/ABSTRACT Increased understanding of the genetic and biochemical mechanisms of cancer has led to new technologies for diagnosis, classification of cancers and now to the development of an array of treatments that may have efficacy for cancers with specific molecular attributes. These new treatments provide both the opportunity and necessity to develop improved designs and data adaptive analysis methods for clinical trials. Specifically, this research will consider the following: 1) Phase II and Phase III studies for new targeted treatments. Some new anticancer agents offer clinical benefits that vary with respect to target expression of the disease; therefore, better designs are needed to avoid missing promising agents. Strategies will include joint testing of subgroups and shrinkage methods. 2) Adaptive regression methods for exploring patient outcome. The complexity of results from new studies involving targeted therapy demands a better understanding of the relationships between genetic attributes and treatment efficacy. Computational methods that construct rules for patient subgroups with differing prognoses and treatment efficacy will be evaluated. 3) Longitudinal marker process data. Improved methods are also needed to understand the association of sequentially measured biomarkers and their impact and interactions with respect to treatment. We will consider causal modeling constructs to estimate effects of biomarkers in the presence of potentially time-dependant confounding on patient outcome. Software will also be implemented to facilitate the use of methods developed as part of this proposal. The evaluation of new interventions to reduce mortality and incidence of cancers is of significant public interest. Over the last few years there has been rapid progress in the development of molecular targeted therapies and in the identification of potential biomarkers. It is crucial that these new treatments and biomarkers be evaluated in a rigorous and efficient manner to best serve patients and to expand knowledge of these complex diseases. PUBLIC HEALTH RELEVANCE: The major focus of this proposal is the development of design and analysis methods appropriate for targeted agents used alone or in combination with other current cancer therapies. We will develop and evaluate the operating characteristics of flexible clinical trial designs which incorporate biologic heterogeneity based on molecular attributes. We will also study adaptive statistical algorithms for modeling patient outcome and for identifying of groups of patients who may benefit most from these new treatments.



Publications

Structured detection of interactions with the directed lasso.
Authors: Pashova H. , LeBlanc M. , Kooperberg C. .
Source: Statistics In Biosciences, 2017 Dec; 9(2), p. 676-691.
EPub date: 2016-11-29 00:00:00.0.
PMID: 29292402
Related Citations

Effect of measurable ('minimal') residual disease (MRD) information on prediction of relapse and survival in adult acute myeloid leukemia.
Authors: Othus M. , Wood B.L. , Stirewalt D.L. , Estey E.H. , Petersdorf S.H. , Appelbaum F.R. , Erba H.P. , Walter R.B. .
Source: Leukemia, 2016 Oct; 30(10), p. 2080-2083.
PMID: 27133827
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Effect of genetic profiling on prediction of therapeutic resistance and survival in adult acute myeloid leukemia.
Authors: Walter R.B. , Othus M. , Paietta E.M. , Racevskis J. , Fernandez H.F. , Lee J.W. , Sun Z. , Tallman M.S. , Patel J. , Gönen M. , et al. .
Source: Leukemia, 2015 Oct; 29(10), p. 2104-7.
PMID: 25772026
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Empiric definition of eligibility criteria for clinical trials in relapsed/refractory acute myeloid leukemia: analysis of 1,892 patients from HOVON/SAKK and SWOG.
Authors: Walter R.B. , Othus M. , Löwenberg B. , Ossenkoppele G.J. , Petersdorf S.H. , Pabst T. , Vekemans M.C. , Appelbaum F.R. , Erba H.P. , Estey E.H. .
Source: Haematologica, 2015 Oct; 100(10), p. e409-11.
PMID: 26160876
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Resistance prediction in AML: analysis of 4601 patients from MRC/NCRI, HOVON/SAKK, SWOG and MD Anderson Cancer Center.
Authors: Walter R.B. , Othus M. , Burnett A.K. , Löwenberg B. , Kantarjian H.M. , Ossenkoppele G.J. , Hills R.K. , Ravandi F. , Pabst T. , Evans A. , et al. .
Source: Leukemia, 2015 Feb; 29(2), p. 312-20.
PMID: 25113226
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Trimodality Therapy For Superior Sulcus Non-small Cell Lung Cancer: Southwest Oncology Group-intergroup Trial S0220
Authors: Kernstine K.H. , Moon J. , Kraut M.J. , Pisters K.M. , Sonett J.R. , Rusch V.W. , Thomas C.R. , Waddell T.K. , Jett J.R. , Lyss A.P. , et al. .
Source: The Annals Of Thoracic Surgery, 2014 Aug; 98(2), p. 402-10.
PMID: 24980603
Related Citations

Modeling The Relationship Between Progression-free Survival And Overall Survival: The Phase Ii/iii Trial
Authors: Redman M.W. , Goldman B.H. , LeBlanc M. , Schott A. , Baker L.H. .
Source: Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research, 2013-05-15 00:00:00.0; 19(10), p. 2646-56.
PMID: 23669424
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Significance Of Fab Subclassification Of "acute Myeloid Leukemia, Nos" In The 2008 Who Classification: Analysis Of 5848 Newly Diagnosed Patients
Authors: Walter R.B. , Othus M. , Burnett A.K. , Löwenberg B. , Kantarjian H.M. , Ossenkoppele G.J. , Hills R.K. , van Montfort K.G. , Ravandi F. , Evans A. , et al. .
Source: Blood, 2013-03-28 00:00:00.0; 121(13), p. 2424-31.
PMID: 23325837
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Boosting For Detection Of Gene-environment Interactions
Authors: Pashova H. , LeBlanc M. , Kooperberg C. .
Source: Statistics In Medicine, 2013-01-30 00:00:00.0; 32(2), p. 255-66.
PMID: 22764060
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Early Phase Trial Design For Assessing Several Dose Levels For Toxicity And Efficacy For Targeted Agents
Authors: Hoering A. , Mitchell A. , LeBlanc M. , Crowley J. .
Source: Clinical Trials (london, England), 2013; 10(3), p. 422-9.
PMID: 23529697
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Multivariate Detection Of Gene-gene Interactions
Authors: Rajapakse I. , Perlman M.D. , Martin P.J. , Hansen J.A. , Kooperberg C. .
Source: Genetic Epidemiology, 2012 Sep; 36(6), p. 622-30.
PMID: 22782518
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Design Of A Phase Iii Clinical Trial With Prospective Biomarker Validation: Swog S0819
Authors: Redman M.W. , Crowley J.J. , Herbst R.S. , Hirsch F.R. , Gandara D.R. .
Source: Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research, 2012-08-01 00:00:00.0; 18(15), p. 4004-12.
PMID: 22592956
Related Citations

Cure Models As A Useful Statistical Tool For Analyzing Survival
Authors: Othus M. , Barlogie B. , Leblanc M.L. , Crowley J.J. .
Source: Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research, 2012-07-15 00:00:00.0; 18(14), p. 3731-6.
PMID: 22675175
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A Novel Variational Bayes Multiple Locus Z-statistic For Genome-wide Association Studies With Bayesian Model Averaging
Authors: Logsdon B.A. , Carty C.L. , Reiner A.P. , Dai J.Y. , Kooperberg C. .
Source: Bioinformatics (oxford, England), 2012-07-01 00:00:00.0; 28(13), p. 1738-44.
PMID: 22563072
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Choosing Phase Ii Endpoints And Designs: Evaluating The Possibilities
Authors: LeBlanc M. , Tangen C. .
Source: Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research, 2012-04-15 00:00:00.0; 18(8), p. 2130-2.
PMID: 22407830
Related Citations

Powerful Cocktail Methods For Detecting Genome-wide Gene-environment Interaction
Authors: Hsu L. , Jiao S. , Dai J.Y. , Hutter C. , Peters U. , Kooperberg C. .
Source: Genetic Epidemiology, 2012 Apr; 36(3), p. 183-94.
PMID: 22714933
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Change Point-cure Models With Application To Estimating The Change-point Effect Of Age Of Diagnosis Among Prostate Cancer Patients
Authors: Othus M. , Li Y. , Tiwari R. .
Source: Journal Of Applied Statistics, 2012; 39(4), p. 901-911.
PMID: 22544992
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Prediction Of Early Death After Induction Therapy For Newly Diagnosed Acute Myeloid Leukemia With Pretreatment Risk Scores: A Novel Paradigm For Treatment Assignment
Authors: Walter,R.B. , Othus,M. , Borthakur,G. , Ravandi,F. , Cortes,J.E. , Pierce,S.A. , Appelbaum,F.R. , Kantarjian,H.A. , Estey,E.H. .
Source: Journal Of Clinical Oncology : Official Journal Of The American Society Of Clinical Oncology, 2011-11-20 00:00:00.0; 29(33), p. 4417-23.
PMID: 21969499
Related Citations

More Randomization In Phase Ii Trials: Necessary But Not Sufficient
Authors: Rubinstein,L. , Leblanc,M. , Smith,M.A. .
Source: Journal Of The National Cancer Institute, 2011-07-20 00:00:00.0; 103(14), p. 1075-7.
PMID: 21709273
Related Citations

Seamless Phase I-ii Trial Design For Assessing Toxicity And Efficacy For Targeted Agents
Authors: Hoering,A. , LeBlanc,M. , Crowley,J. .
Source: Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research, 2011-02-15 00:00:00.0; 17(4), p. 640-6.
PMID: 21135145
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A Strategy For Full Interrogation Of Prognostic Gene Expression Patterns: Exploring The Biology Of Diffuse Large B Cell Lymphoma
Authors: Rimsza L.M. , Unger J.M. , Tome M.E. , Leblanc M.L. .
Source: Plos One, 2011; 6(8), p. e22267.
PMID: 21829609
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A Gaussian Copula Model For Multivariate Survival Data
Authors: Othus M. , Li Y. .
Source: Statistics In Biosciences, 2010 Dec; 2(2), p. 154-179.
PMID: 22162742
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Risk prediction using genome-wide association studies.
Authors: Kooperberg C. , LeBlanc M. , Obenchain V. .
Source: Genetic Epidemiology, 2010 Nov; 34(7), p. 643-52.
PMID: 20842684
Related Citations

Boosting predictions of treatment success.
Authors: LeBlanc M. , Kooperberg C. .
Source: Proceedings Of The National Academy Of Sciences Of The United States Of America, 2010-08-03 00:00:00.0; 107(31), p. 13559-60.
EPub date: 2010-08-03 00:00:00.0.
PMID: 20656935
Related Citations

SHARE: an adaptive algorithm to select the most informative set of SNPs for candidate genetic association.
Authors: Dai J.Y. , Leblanc M. , Smith N.L. , Psaty B. , Kooperberg C. .
Source: Biostatistics (oxford, England), 2009 Oct; 10(4), p. 680-93.
PMID: 19605740
Related Citations

Adaptively weighted association statistics.
Authors: LeBlanc M. , Kooperberg C. .
Source: Genetic Epidemiology, 2009 Jul; 33(5), p. 442-52.
PMID: 19170133
Related Citations

Structures and Assumptions: Strategies to Harness Gene × Gene and Gene × Environment Interactions in GWAS.
Authors: Kooperberg C. , Leblanc M. , Dai J.Y. , Rajapakse I. .
Source: Statistical Science : A Review Journal Of The Institute Of Mathematical Statistics, 2009; 24(4), p. 472-488.
PMID: 20640184
Related Citations

Randomized Phase Iii Clinical Trial Designs For Targeted Agents
Authors: Hoering,A. , Leblanc,M. , Crowley,J.J. .
Source: Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research, 2008-07-15 00:00:00.0; 14(14), p. 4358-67.
PMID: 18628448
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Interim Futility Analysis With Intermediate Endpoints
Authors: Goldman B. , LeBlanc M. , Crowley J. .
Source: Clinical Trials (london, England), 2008; 5(1), p. 14-22.
PMID: 18283075
Related Citations

Imputation methods to improve inference in SNP association studies.
Authors: Dai J.Y. , Ruczinski I. , LeBlanc M. , Kooperberg C. .
Source: Genetic Epidemiology, 2006 Dec; 30(8), p. 690-702.
PMID: 16986162
Related Citations

Extreme regression.
Authors: LeBlanc M. , Moon J. , Kooperberg C. .
Source: Biostatistics (oxford, England), 2006 Jan; 7(1), p. 71-84.
PMID: 15972888
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Adaptive Risk Group Refinement
Authors: LeBlanc M. , Moon J. , Crowley J. .
Source: Biometrics, 2005 Jun; 61(2), p. 370-8.
PMID: 16011683
Related Citations

Directed indices for exploring gene expression data.
Authors: LeBlanc M. , Kooperberg C. , Grogan T.M. , Miller T.P. .
Source: Bioinformatics (oxford, England), 2003-04-12 00:00:00.0; 19(6), p. 686-93.
PMID: 12691980
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Partitioning And Peeling For Constructing Prognostic Groups
Authors: LeBlanc M. , Jacobson J. , Crowley J. .
Source: Statistical Methods In Medical Research, 2002 Jun; 11(3), p. 247-74.
PMID: 12094758
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