Grant Details
Grant Number: |
2R01CA090998-06A2 Interpret this number |
Primary Investigator: |
Leblanc, Michael |
Organization: |
Fred Hutchinson Cancer Research Center |
Project Title: |
Statistical Methods for Clinical Studies |
Fiscal Year: |
2008 |
Abstract
DESCRIPTION (provided by applicant): PROJECT SUMMARY/ABSTRACT Increased understanding of the genetic and biochemical mechanisms of cancer has led to new technologies for diagnosis, classification of cancers and now to the development of an array of treatments that may have efficacy for cancers with specific molecular attributes. These new treatments provide both the opportunity and necessity to develop improved designs and data adaptive analysis methods for clinical trials. Specifically, this research will consider the following: 1) Phase II and Phase III studies for new targeted treatments. Some new anticancer agents offer clinical benefits that vary with respect to target expression of the disease; therefore, better designs are needed to avoid missing promising agents. Strategies will include joint testing of subgroups and shrinkage methods. 2) Adaptive regression methods for exploring patient outcome. The complexity of results from new studies involving targeted therapy demands a better understanding of the relationships between genetic attributes and treatment efficacy. Computational methods that construct rules for patient subgroups with differing prognoses and treatment efficacy will be evaluated. 3) Longitudinal marker process data. Improved methods are also needed to understand the association of sequentially measured biomarkers and their impact and interactions with respect to treatment. We will consider causal modeling constructs to estimate effects of biomarkers in the presence of potentially time-dependant confounding on patient outcome. Software will also be implemented to facilitate the use of methods developed as part of this proposal. The evaluation of new interventions to reduce mortality and incidence of cancers is of significant public interest. Over the last few years there has been rapid progress in the development of molecular targeted therapies and in the identification of potential biomarkers. It is crucial that these new treatments and biomarkers be evaluated in a rigorous and efficient manner to best serve patients and to expand knowledge of these complex diseases. PUBLIC HEALTH RELEVANCE: The major focus of this proposal is the development of design and analysis methods appropriate for targeted agents used alone or in combination with other current cancer therapies. We will develop and evaluate the operating characteristics of flexible clinical trial designs which incorporate biologic heterogeneity based on molecular attributes. We will also study adaptive statistical algorithms for modeling patient outcome and for identifying of groups of patients who may benefit most from these new treatments.
Publications
Structured detection of interactions with the directed lasso.
Authors: Pashova H.
, LeBlanc M.
, Kooperberg C.
.
Source: Statistics In Biosciences, 2017 Dec; 9(2), p. 676-691.
EPub date: 2016-11-29 00:00:00.0.
PMID: 29292402
Related Citations
Effect of measurable ('minimal') residual disease (MRD) information on prediction of relapse and survival in adult acute myeloid leukemia.
Authors: Othus M.
, Wood B.L.
, Stirewalt D.L.
, Estey E.H.
, Petersdorf S.H.
, Appelbaum F.R.
, Erba H.P.
, Walter R.B.
.
Source: Leukemia, 2016 Oct; 30(10), p. 2080-2083.
PMID: 27133827
Related Citations
Effect of genetic profiling on prediction of therapeutic resistance and survival in adult acute myeloid leukemia.
Authors: Walter R.B.
, Othus M.
, Paietta E.M.
, Racevskis J.
, Fernandez H.F.
, Lee J.W.
, Sun Z.
, Tallman M.S.
, Patel J.
, Gönen M.
, et al.
.
Source: Leukemia, 2015 Oct; 29(10), p. 2104-7.
PMID: 25772026
Related Citations
Empiric definition of eligibility criteria for clinical trials in relapsed/refractory acute myeloid leukemia: analysis of 1,892 patients from HOVON/SAKK and SWOG.
Authors: Walter R.B.
, Othus M.
, Löwenberg B.
, Ossenkoppele G.J.
, Petersdorf S.H.
, Pabst T.
, Vekemans M.C.
, Appelbaum F.R.
, Erba H.P.
, Estey E.H.
.
Source: Haematologica, 2015 Oct; 100(10), p. e409-11.
PMID: 26160876
Related Citations
Resistance prediction in AML: analysis of 4601 patients from MRC/NCRI, HOVON/SAKK, SWOG and MD Anderson Cancer Center.
Authors: Walter R.B.
, Othus M.
, Burnett A.K.
, Löwenberg B.
, Kantarjian H.M.
, Ossenkoppele G.J.
, Hills R.K.
, Ravandi F.
, Pabst T.
, Evans A.
, et al.
.
Source: Leukemia, 2015 Feb; 29(2), p. 312-20.
PMID: 25113226
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Trimodality Therapy For Superior Sulcus Non-small Cell Lung Cancer: Southwest Oncology Group-intergroup Trial S0220
Authors: Kernstine K.H.
, Moon J.
, Kraut M.J.
, Pisters K.M.
, Sonett J.R.
, Rusch V.W.
, Thomas C.R.
, Waddell T.K.
, Jett J.R.
, Lyss A.P.
, et al.
.
Source: The Annals Of Thoracic Surgery, 2014 Aug; 98(2), p. 402-10.
PMID: 24980603
Related Citations
Modeling The Relationship Between Progression-free Survival And Overall Survival: The Phase Ii/iii Trial
Authors: Redman M.W.
, Goldman B.H.
, LeBlanc M.
, Schott A.
, Baker L.H.
.
Source: Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research, 2013-05-15 00:00:00.0; 19(10), p. 2646-56.
PMID: 23669424
Related Citations
Significance Of Fab Subclassification Of "acute Myeloid Leukemia, Nos" In The 2008 Who Classification: Analysis Of 5848 Newly Diagnosed Patients
Authors: Walter R.B.
, Othus M.
, Burnett A.K.
, Löwenberg B.
, Kantarjian H.M.
, Ossenkoppele G.J.
, Hills R.K.
, van Montfort K.G.
, Ravandi F.
, Evans A.
, et al.
.
Source: Blood, 2013-03-28 00:00:00.0; 121(13), p. 2424-31.
PMID: 23325837
Related Citations
Boosting For Detection Of Gene-environment Interactions
Authors: Pashova H.
, LeBlanc M.
, Kooperberg C.
.
Source: Statistics In Medicine, 2013-01-30 00:00:00.0; 32(2), p. 255-66.
PMID: 22764060
Related Citations
Early Phase Trial Design For Assessing Several Dose Levels For Toxicity And Efficacy For Targeted Agents
Authors: Hoering A.
, Mitchell A.
, LeBlanc M.
, Crowley J.
.
Source: Clinical Trials (london, England), 2013; 10(3), p. 422-9.
PMID: 23529697
Related Citations
Multivariate Detection Of Gene-gene Interactions
Authors: Rajapakse I.
, Perlman M.D.
, Martin P.J.
, Hansen J.A.
, Kooperberg C.
.
Source: Genetic Epidemiology, 2012 Sep; 36(6), p. 622-30.
PMID: 22782518
Related Citations
Design Of A Phase Iii Clinical Trial With Prospective Biomarker Validation: Swog S0819
Authors: Redman M.W.
, Crowley J.J.
, Herbst R.S.
, Hirsch F.R.
, Gandara D.R.
.
Source: Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research, 2012-08-01 00:00:00.0; 18(15), p. 4004-12.
PMID: 22592956
Related Citations
Cure Models As A Useful Statistical Tool For Analyzing Survival
Authors: Othus M.
, Barlogie B.
, Leblanc M.L.
, Crowley J.J.
.
Source: Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research, 2012-07-15 00:00:00.0; 18(14), p. 3731-6.
PMID: 22675175
Related Citations
A Novel Variational Bayes Multiple Locus Z-statistic For Genome-wide Association Studies With Bayesian Model Averaging
Authors: Logsdon B.A.
, Carty C.L.
, Reiner A.P.
, Dai J.Y.
, Kooperberg C.
.
Source: Bioinformatics (oxford, England), 2012-07-01 00:00:00.0; 28(13), p. 1738-44.
PMID: 22563072
Related Citations
Choosing Phase Ii Endpoints And Designs: Evaluating The Possibilities
Authors: LeBlanc M.
, Tangen C.
.
Source: Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research, 2012-04-15 00:00:00.0; 18(8), p. 2130-2.
PMID: 22407830
Related Citations
Powerful Cocktail Methods For Detecting Genome-wide Gene-environment Interaction
Authors: Hsu L.
, Jiao S.
, Dai J.Y.
, Hutter C.
, Peters U.
, Kooperberg C.
.
Source: Genetic Epidemiology, 2012 Apr; 36(3), p. 183-94.
PMID: 22714933
Related Citations
Change Point-cure Models With Application To Estimating The Change-point Effect Of Age Of Diagnosis Among Prostate Cancer Patients
Authors: Othus M.
, Li Y.
, Tiwari R.
.
Source: Journal Of Applied Statistics, 2012; 39(4), p. 901-911.
PMID: 22544992
Related Citations
Prediction Of Early Death After Induction Therapy For Newly Diagnosed Acute Myeloid Leukemia With Pretreatment Risk Scores: A Novel Paradigm For Treatment Assignment
Authors: Walter,R.B.
, Othus,M.
, Borthakur,G.
, Ravandi,F.
, Cortes,J.E.
, Pierce,S.A.
, Appelbaum,F.R.
, Kantarjian,H.A.
, Estey,E.H.
.
Source: Journal Of Clinical Oncology : Official Journal Of The American Society Of Clinical Oncology, 2011-11-20 00:00:00.0; 29(33), p. 4417-23.
PMID: 21969499
Related Citations
More Randomization In Phase Ii Trials: Necessary But Not Sufficient
Authors: Rubinstein,L.
, Leblanc,M.
, Smith,M.A.
.
Source: Journal Of The National Cancer Institute, 2011-07-20 00:00:00.0; 103(14), p. 1075-7.
PMID: 21709273
Related Citations
Seamless Phase I-ii Trial Design For Assessing Toxicity And Efficacy For Targeted Agents
Authors: Hoering,A.
, LeBlanc,M.
, Crowley,J.
.
Source: Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research, 2011-02-15 00:00:00.0; 17(4), p. 640-6.
PMID: 21135145
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A Strategy For Full Interrogation Of Prognostic Gene Expression Patterns: Exploring The Biology Of Diffuse Large B Cell Lymphoma
Authors: Rimsza L.M.
, Unger J.M.
, Tome M.E.
, Leblanc M.L.
.
Source: Plos One, 2011; 6(8), p. e22267.
PMID: 21829609
Related Citations
A Gaussian Copula Model For Multivariate Survival Data
Authors: Othus M.
, Li Y.
.
Source: Statistics In Biosciences, 2010 Dec; 2(2), p. 154-179.
PMID: 22162742
Related Citations
Risk prediction using genome-wide association studies.
Authors: Kooperberg C.
, LeBlanc M.
, Obenchain V.
.
Source: Genetic Epidemiology, 2010 Nov; 34(7), p. 643-52.
PMID: 20842684
Related Citations
Boosting predictions of treatment success.
Authors: LeBlanc M.
, Kooperberg C.
.
Source: Proceedings Of The National Academy Of Sciences Of The United States Of America, 2010-08-03 00:00:00.0; 107(31), p. 13559-60.
EPub date: 2010-08-03 00:00:00.0.
PMID: 20656935
Related Citations
SHARE: an adaptive algorithm to select the most informative set of SNPs for candidate genetic association.
Authors: Dai J.Y.
, Leblanc M.
, Smith N.L.
, Psaty B.
, Kooperberg C.
.
Source: Biostatistics (oxford, England), 2009 Oct; 10(4), p. 680-93.
PMID: 19605740
Related Citations
Adaptively weighted association statistics.
Authors: LeBlanc M.
, Kooperberg C.
.
Source: Genetic Epidemiology, 2009 Jul; 33(5), p. 442-52.
PMID: 19170133
Related Citations
Structures and Assumptions: Strategies to Harness Gene × Gene and Gene × Environment Interactions in GWAS.
Authors: Kooperberg C.
, Leblanc M.
, Dai J.Y.
, Rajapakse I.
.
Source: Statistical Science : A Review Journal Of The Institute Of Mathematical Statistics, 2009; 24(4), p. 472-488.
PMID: 20640184
Related Citations
Randomized Phase Iii Clinical Trial Designs For Targeted Agents
Authors: Hoering,A.
, Leblanc,M.
, Crowley,J.J.
.
Source: Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research, 2008-07-15 00:00:00.0; 14(14), p. 4358-67.
PMID: 18628448
Related Citations
Interim Futility Analysis With Intermediate Endpoints
Authors: Goldman B.
, LeBlanc M.
, Crowley J.
.
Source: Clinical Trials (london, England), 2008; 5(1), p. 14-22.
PMID: 18283075
Related Citations
Imputation methods to improve inference in SNP association studies.
Authors: Dai J.Y.
, Ruczinski I.
, LeBlanc M.
, Kooperberg C.
.
Source: Genetic Epidemiology, 2006 Dec; 30(8), p. 690-702.
PMID: 16986162
Related Citations
Extreme regression.
Authors: LeBlanc M.
, Moon J.
, Kooperberg C.
.
Source: Biostatistics (oxford, England), 2006 Jan; 7(1), p. 71-84.
PMID: 15972888
Related Citations
Adaptive Risk Group Refinement
Authors: LeBlanc M.
, Moon J.
, Crowley J.
.
Source: Biometrics, 2005 Jun; 61(2), p. 370-8.
PMID: 16011683
Related Citations
Directed indices for exploring gene expression data.
Authors: LeBlanc M.
, Kooperberg C.
, Grogan T.M.
, Miller T.P.
.
Source: Bioinformatics (oxford, England), 2003-04-12 00:00:00.0; 19(6), p. 686-93.
PMID: 12691980
Related Citations
Partitioning And Peeling For Constructing Prognostic Groups
Authors: LeBlanc M.
, Jacobson J.
, Crowley J.
.
Source: Statistical Methods In Medical Research, 2002 Jun; 11(3), p. 247-74.
PMID: 12094758
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