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Grant Details

Grant Number: 5U2CCA252971-05 Interpret this number
Primary Investigator: Lenz, Heinz Josef
Organization: University Of Southern California
Project Title: Usc Pe-Gcs: Optimizing Engagement of Hispanic Colorectal Cancer Patients in Cancer Genomic Characterization Studies
Fiscal Year: 2025


Abstract

Colorectal cancer (CRC) is the second leading cause of cancer-related deaths in the US. Populations exhibiting variability in colorectal cancer outcomes, especially those experiencing higher incidence rates and early-onset CRC, require more thorough genomic characterization. Current genomic research has extensively characterized CRC but lacks sufficient representation of patients with early onset and adverse clinical outcomes. Comprehensive molecular characterization is crucial for determining whether observed clinical variations are correlated with specific genomic factors or biological pathways. To achieve significant advances in genomic characterization research, improved strategies for participant recruitment, consent, and engagement are required. Effective participant involvement in research is crucial for advancing precision medicine initiatives and ensuring robust translational biomedical research outcomes. Developing optimized methods to engage and retain research participants throughout all stages of genomic research, from initial recruitment through results dissemination, will enhance scientific validity, strengthen participant-researcher relationships, and potentially improve clinical outcomes. To address these needs, we established the USC Center for Optimization of Participant Engagement in Cancer Characterization (COPECC). This Center specializes in optimizing recruitment and retention methods for genomic research related to colorectal cancer. As part of the NCI U2C Participant Engagement and Cancer Genome Sequencing (PE-CGS) Network, USC COPECC employs rigorous scientific methodologies for participant engagement, data collection, genomic analysis, and results dissemination. The overall objective of USC COPECC is to generate scientifically robust data and standardized engagement practices to enhance research participation and optimize outcomes in CRC genomic research across populations with different genomic profiles.



Publications

Artificial Intelligence-Enhanced Molecular Profiling of JAK-STAT Pathway Alterations in FOLFOX-Treated Early-Onset Colorectal Cancer.
Authors: Diaz F.C. , Waldrup B. , Carranza F.G. , Manjarrez S. , Velazquez-Villarreal E. .
Source: International Journal Of Molecular Sciences, 2026-01-02 00:00:00.0; 27(1), .
EPub date: 2026-01-02 00:00:00.0.
PMID: 41516350
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Artificial Intelligence-Guided Molecular Determinants of PI3K Pathway Alterations in Early-Onset Colorectal Cancer Among High-Risk Groups Receiving FOLFOX.
Authors: Diaz F.C. , Waldrup B. , Carranza F.G. , Manjarrez S. , Velazquez-Villarreal E. .
Source: Biomedicines, 2025-10-27 00:00:00.0; 13(11), .
EPub date: 2025-10-27 00:00:00.0.
PMID: 41301724
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Artificial Intelligence-Enhanced Precision Medicine Reveals Prognostic Impact of TGF-Beta Pathway Alterations in FOLFOX-Treated Early-Onset Colorectal Cancer Among Disproportionately Affected Populations.
Authors: Diaz F.C. , Waldrup B. , Carranza F.G. , Manjarrez S. , Velazquez-Villarreal E. .
Source: International Journal Of Molecular Sciences, 2025-09-17 00:00:00.0; 26(18), .
EPub date: 2025-09-17 00:00:00.0.
PMID: 41009631
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Optimizing participant and community engagement in cancer genomic sequencing research.
Authors: Crossnohere N.L. , Schuster A.L.R. , Blair C.K. , Bland H. , Carpten J.D. , Claus E.B. , Colditz G.A. , Diehl D. , Ding L. , Drake B.F. , et al. .
Source: Genetics In Medicine : Official Journal Of The American College Of Medical Genetics, 2025 Sep; 27(9), p. 101483.
EPub date: 2025-06-11 00:00:00.0.
PMID: 40517303
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AI-HOPE-TP53: A Conversational Artificial Intelligence Agent for Pathway-Centric Analysis of TP53-Driven Molecular Alterations in Early-Onset Colorectal Cancer.
Authors: Yang E.W. , Waldrup B. , Velazquez-Villarreal E. .
Source: Cancers, 2025-08-31 00:00:00.0; 17(17), .
EPub date: 2025-08-31 00:00:00.0.
PMID: 40940961
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Precision Oncology Insights into WNT Pathway Alterations in FOLFOX-Treated Early-Onset Colorectal Cancer in High-Risk Populations.
Authors: Diaz F.C. , Waldrup B. , Carranza F.G. , Manjarrez S. , Velazquez-Villarreal E. .
Source: Cancers, 2025-08-29 00:00:00.0; 17(17), .
EPub date: 2025-08-29 00:00:00.0.
PMID: 40940930
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Pathway-Specific Genomic Alterations in Pancreatic Cancer Across Populations at Risk.
Authors: Monge C. , Waldrup B. , Carranza F.G. , Manjarrez S. , Velazquez-Villarreal E. .
Source: International Journal Of Molecular Sciences, 2025-08-08 00:00:00.0; 26(16), .
EPub date: 2025-08-08 00:00:00.0.
PMID: 40869017
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Precision Oncology Through Dialogue: AI-HOPE-RTK-RAS Integrates Clinical and Genomic Insights into RTK-RAS Alterations in Colorectal Cancer.
Authors: Yang E.W. , Waldrup B. , Velazquez-Villarreal E. .
Source: Biomedicines, 2025-07-28 00:00:00.0; 13(8), .
EPub date: 2025-07-28 00:00:00.0.
PMID: 40868090
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Decoding the JAK-STAT Axis in Colorectal Cancer with AI-HOPE-JAK-STAT: A Conversational Artificial Intelligence Approach to Clinical-Genomic Integration.
Authors: Yang E.W. , Waldrup B. , Velazquez-Villarreal E. .
Source: Cancers, 2025-07-17 00:00:00.0; 17(14), .
EPub date: 2025-07-17 00:00:00.0.
PMID: 40723258
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From Mutation to Prognosis: AI-HOPE-PI3K Enables Artificial Intelligence Agent-Driven Integration of PI3K Pathway Data in Colorectal Cancer Precision Medicine.
Authors: Yang E.W. , Waldrup B. , Velazquez-Villarreal E. .
Source: International Journal Of Molecular Sciences, 2025-07-05 00:00:00.0; 26(13), .
EPub date: 2025-07-05 00:00:00.0.
PMID: 40650262
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AI-HOPE: an AI-driven conversational agent for enhanced clinical and genomic data integration in precision medicine research.
Authors: Yang E.W. , Velazquez-Villarreal E. .
Source: Bioinformatics (oxford, England), 2025-07-01 00:00:00.0; 41(7), .
PMID: 40577785
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Red meat intake interacts with a TGF-β-pathway-based polygenic risk score to impact colorectal cancer risk: Application of a novel approach for polygenic risk score construction.
Authors: Mendez J.S. , Queme B. , Fu Y. , Morrison J. , Lewinger J.P. , Kawaguchi E. , Mi H. , Obón-Santacana M. , Moratalla-Navarro F. , Martín V. , et al. .
Source: Medrxiv : The Preprint Server For Health Sciences, 2025-06-16 00:00:00.0; , .
EPub date: 2025-06-16 00:00:00.0.
PMID: 40568668
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Colorectal Tumors in Diverse Patient Populations Feature a Spectrum of Somatic Mutational Profiles.
Authors: Matejcic M. , Teer J.K. , Hoehn H.J. , Diaz D.B. , Shankar K. , Gong J. , Nguyen N.T. , Loroña N.C. , Coppola D. , Fulmer C.G. , et al. .
Source: Cancer Research, 2025-05-15 00:00:00.0; 85(10), p. 1928-1944.
PMID: 40126181
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Molecular Heterogeneity in Early-Onset Colorectal Cancer: Pathway-Specific Insights in High-Risk Populations.
Authors: Monge C. , Waldrup B. , Carranza F.G. , Velazquez-Villarreal E. .
Source: Cancers, 2025-04-15 00:00:00.0; 17(8), .
EPub date: 2025-04-15 00:00:00.0.
PMID: 40282501
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Comparative Genomic Analysis of Key Oncogenic Pathways in Hepatocellular Carcinoma Among Diverse Populations.
Authors: Monge C. , Waldrup B. , Carranza F.G. , Velazquez-Villarreal E. .
Source: Cancers, 2025-04-13 00:00:00.0; 17(8), .
EPub date: 2025-04-13 00:00:00.0.
PMID: 40282485
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Detecting PI3K and TP53 Pathway Disruptions in Early-Onset Colorectal Cancer Among Hispanic/Latino Patients.
Authors: Monge C. , Waldrup B. , Manjarrez S. , Carranza F.G. , Velazquez-Villarreal E. .
Source: Cancer Medicine, 2025 Apr; 14(7), p. e70791.
PMID: 40165548
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Ethnicity-Specific Molecular Alterations in MAPK and JAK/STAT Pathways in Early-Onset Colorectal Cancer.
Authors: Monge C. , Waldrup B. , Carranza F.G. , Velazquez-Villarreal E. .
Source: Cancers, 2025-03-25 00:00:00.0; 17(7), .
EPub date: 2025-03-25 00:00:00.0.
PMID: 40227607
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Molecular Alterations in TP53, WNT, PI3K, TGF-Beta, and RTK/RAS Pathways in Gastric Cancer Among Ethnically Heterogeneous Cohorts.
Authors: Monge C. , Waldrup B. , Carranza F.G. , Velazquez-Villarreal E. .
Source: Cancers, 2025-03-23 00:00:00.0; 17(7), .
EPub date: 2025-03-23 00:00:00.0.
PMID: 40227587
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Integrative multi-omics profiling of colorectal cancer from a Hispanic/Latino cohort of patients.
Authors: Waldrup B. , Carranza F. , Jin Y. , Amzaleg Y. , Postel M. , Craig D.W. , Carpten J.D. , Salhia B. , Ricker C.N. , Culver J.O. , et al. .
Source: Medrxiv : The Preprint Server For Health Sciences, 2024-11-15 00:00:00.0; , .
EPub date: 2024-11-15 00:00:00.0.
PMID: 39606335
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Colorectal cancer outcomes among Hispanic/Latino patients in the United States: a scoping review protocol.
Authors: Sanchez-Mendez J. , Quino J.E. , Xiong W. , Stern M.C. .
Source: Jbi Evidence Synthesis, 2024-07-01 00:00:00.0; 22(7), p. 1347-1354.
EPub date: 2024-07-01 00:00:00.0.
PMID: 38745480
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Genetic risk impacts the association of menopausal hormone therapy with colorectal cancer risk.
Authors: Tian Y. , Lin Y. , Qu C. , Arndt V. , Baurley J.W. , Berndt S.I. , Bien S.A. , Bishop D.T. , Brenner H. , Buchanan D.D. , et al. .
Source: British Journal Of Cancer, 2024 Jun; 130(10), p. 1687-1696.
EPub date: 2024-04-01 00:00:00.0.
PMID: 38561434
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Genome-Wide Gene-Environment Interaction Analyses to Understand the Relationship between Red Meat and Processed Meat Intake and Colorectal Cancer Risk.
Authors: Stern M.C. , Sanchez Mendez J. , Kim A.E. , Obón-Santacana M. , Moratalla-Navarro F. , Martín V. , Moreno V. , Lin Y. , Bien S.A. , Qu C. , et al. .
Source: Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology, 2024-03-01 00:00:00.0; 33(3), p. 400-410.
PMID: 38112776
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Disparities among Black and Hispanic colorectal cancer patients: Findings from the California Cancer Registry.
Authors: Mendez J.S. , Wang R. , Liu L. , Zhang J. , Schmitt S.L. , Figueiredo J. , Lenz H.J. , Stern M.C. .
Source: Cancer Medicine, 2023-11-01 00:00:00.0; , .
EPub date: 2023-11-01 00:00:00.0.
PMID: 37909220
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Priorities to promote participant engagement in the Participant Engagement and Cancer Genome Sequencing (PE-CGS) Network.
Authors: Schuster A.L.R. , Crossnohere N.L. , Bachini M. , Blair C.K. , Carpten J.D. , Claus E.B. , Colditz G.A. , Ding L. , Drake B.F. , Fields R.C. , et al. .
Source: Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology, 2023-02-15 00:00:00.0; , .
EPub date: 2023-02-15 00:00:00.0.
PMID: 36791345
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Barriers and Facilitators to Genetic Education, Risk Assessment, and Testing: Considerations on Advancing Equitable Genetics Care.
Authors: Rodriguez N.J. , Ricker C. , Stoffel E.M. , Syngal S. .
Source: Gastroenterology, 2023 Jan; 164(1), p. 5-8.
PMID: 36529467
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Barriers and Facilitators to Genetic Education, Risk Assessment, and Testing: Considerations on Advancing Equitable Genetics Care.
Authors: Rodriguez N.J. , Ricker C. , Stoffel E.M. , Syngal S. .
Source: Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association, 2023 Jan; 21(1), p. 3-7.
PMID: 36549838
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Transcriptome analysis provides critical answers to the "variants of uncertain significance" conundrum.
Authors: Postel M.D. , Culver J.O. , Ricker C. , Craig D.W. .
Source: Human Mutation, 2022-05-05 00:00:00.0; , .
EPub date: 2022-05-05 00:00:00.0.
PMID: 35510381
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