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Grant Details

Grant Number: 5R01CA246418-04 Interpret this number
Primary Investigator: Bian, Jiang
Organization: University Of Florida
Project Title: The Benefits and Harms of Lung Cancer Screening in Florida
Fiscal Year: 2023


Abstract

PROJECT SUMMARY/ABSTRACT Lung cancer is the leading cause of cancer related death in both men and women in the United States. Currently, approximately 70% of lung cancer patients are diagnosed at advanced stages, and the 5-year survival rate of advanced stage lung cancer is very low, at only 16%. Investigators have been searching for effective screening modalities for the early detection of lung cancer so that patients can receive curative treatments at an early stage. When the National Lung Screening Trial (NLST) demonstrated the effectiveness of using low-dose computed tomography (LDCT) scan for lung cancer screening (LCS), researchers and physicians hope to save lives from lung cancer by screening high-risk population who aged 55 to 77 years and have a 30 pack years making history or former smokes who have quitted within the past 15 years. Since the release of the landmark NLST results, many medical associations published guidelines to recommend LDCT-based screening for individuals at high risk for lung cancer and the Centers for Medicare and Medicaid Services (CMS) also decided to cover the LCS for Medicare beneficiaries who are at high risk for lung cancer. While many efforts have been made to accelerate the dissemination the beneficial LCS, the concerns over the high false positive rates (96.4% of the positive results), invasive diagnostic procedures, postprocedural complications and health care costs may hinder the utilization of lung cancer screening. This concern was magnified as researchers and policy makers started questioning whether the complication rate and false positives in real-world settings would be even higher than the rates reported in the NLST, which was conducted in a setting with well-established facilities and proficiency in cancer care. Therefore, we propose to understand the contemporary use of lung cancer screening and associated health care outcomes and costs using data from a real-world setting. Our study has three goals: 1) to develop an innovative computable phenotype algorithm to identify high-risk and low-risk individuals for LCS from both structured and unstructured (i.e., clinical notes) electronic health record (EHR) data and to develop advanced natural language processing (NLP) methods to extract LCS related clinical information from clinical notes such as radiology reports; 2) to determine the appropriate and inappropriate use of LDCT among high-risk and low-risk individuals in Florida and to examine the test results of LDCT, the rates of invasive diagnostic procedures, postprocedural complications, and incidental findings in real-world settings; and 3) to develop and validate a microsimulation model of the clinical courses of LCS incorporating the real-world data in LCS to estimate the long-term benefits and the cost-effectiveness of LCS. Our proposed study has the potential to reduce lung cancer incidence and mortality by informing policymakers and practitioners on the appropriateness of contemporary use of LCS. This knowledge will help both patients and physicians better understand the harm- benefit tradeoff of lung cancer screening and transform such knowledge into practice to prevent avoidable postprocedural complications.



Publications

Toward a Computable Phenotype for Determining Eligibility of Lung Cancer Screening Using Electronic Health Records.
Authors: Yang S. , Huang Y. , Lou X. , Lyu T. , Wei R. , Mehta H.J. , Wu Y. , Alvarado M. , Salloum R.G. , Braithwaite D. , et al. .
Source: Jco Clinical Cancer Informatics, 2025 Jan; 9, p. e2400139.
EPub date: 2025-01-16 00:00:00.0.
PMID: 39818952
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Racial/ethnic disparities, artificial intelligence, and cutting-edge research: Proceedings from the 2023 Florida cardio-oncology symposium.
Authors: Bruno K.A. , Fradley M.G. , Brown S.A. , Guha A. , Cousin L. , Guo Y. , O'Dell W.G. , Smuder A.J. , Yang S. , Braithwaite D. , et al. .
Source: American Heart Journal Plus : Cardiology Research And Practice, 2024 Oct; 46, p. 100469.
EPub date: 2024-10-01 00:00:00.0.
PMID: 39431118
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Evolution of digital twins in precision health applications: a scoping review study.
Authors: Huang Y. , Dai H. , Xu J. , Wei R. , Sun L. , Guo Y. , Guo J. , Bian J. .
Source: Research Square, 2024-08-07 00:00:00.0; , .
EPub date: 2024-08-07 00:00:00.0.
PMID: 39149471
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Generative large language models are all-purpose text analytics engines: text-to-text learning is all your need.
Authors: Peng C. , Yang X. , Chen A. , Yu Z. , Smith K.E. , Costa A.B. , Flores M.G. , Bian J. , Wu Y. .
Source: Journal Of The American Medical Informatics Association : Jamia, 2024-04-17 00:00:00.0; , .
EPub date: 2024-04-17 00:00:00.0.
PMID: 38630580
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Identifying social determinants of health from clinical narratives: A study of performance, documentation ratio, and potential bias.
Authors: Yu Z. , Peng C. , Yang X. , Dang C. , Adekkanattu P. , Gopal Patra B. , Peng Y. , Pathak J. , Wilson D.L. , Chang C.Y. , et al. .
Source: Journal Of Biomedical Informatics, 2024-04-14 00:00:00.0; 153, p. 104642.
EPub date: 2024-04-14 00:00:00.0.
PMID: 38621641
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Model tuning or prompt Tuning? a study of large language models for clinical concept and relation extraction.
Authors: Peng C. , Yang X. , Smith K.E. , Yu Z. , Chen A. , Bian J. , Wu Y. .
Source: Journal Of Biomedical Informatics, 2024-03-26 00:00:00.0; 153, p. 104630.
EPub date: 2024-03-26 00:00:00.0.
PMID: 38548007
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The Burden of Cancer and Pre-cancerous Conditions Among Transgender Individuals in a Large Healthcare Network.
Authors: Yang S. , Li Y. , Wheldon C.W. , Prosperi M. , George T.J. , Shenkman E.A. , Wang F. , Bian J. , Guo Y. .
Source: Medrxiv : The Preprint Server For Health Sciences, 2024-03-26 00:00:00.0; , .
EPub date: 2024-03-26 00:00:00.0.
PMID: 38585849
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High-throughput target trial emulation for Alzheimer's disease drug repurposing with real-world data.
Authors: Zang C. , Zhang H. , Xu J. , Zhang H. , Fouladvand S. , Havaldar S. , Cheng F. , Chen K. , Chen Y. , Glicksberg B.S. , et al. .
Source: Nature Communications, 2023-12-11 00:00:00.0; 14(1), p. 8180.
EPub date: 2023-12-11 00:00:00.0.
PMID: 38081829
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Unraveling Racial Disparities in Supportive Care Medication Use among End-of-Life Pancreatic Cancer Patients: Focus on Pain Management and Psychiatric Therapies.
Authors: Allen J.M. , Awunti M. , Guo Y. , Bian J. , Rogers S.C. , Scarton L. , DeRemer D.L. , Wilkie D.J. .
Source: Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology, 2023-12-01 00:00:00.0; 32(12), p. 1675-1682.
PMID: 37788369
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A study of generative large language model for medical research and healthcare.
Authors: Peng C. , Yang X. , Chen A. , Smith K.E. , PourNejatian N. , Costa A.B. , Martin C. , Flores M.G. , Zhang Y. , Magoc T. , et al. .
Source: Npj Digital Medicine, 2023-11-16 00:00:00.0; 6(1), p. 210.
EPub date: 2023-11-16 00:00:00.0.
PMID: 37973919
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Disparities Contributing to Late-Stage Diagnosis of Lung, Colorectal, Breast, and Cervical Cancers: Rural and Urban Poverty in Florida.
Authors: Hall J.M. , Mkuu R.S. , Cho H.D. , Woodard J.N. , Kaye F.J. , Bian J. , Shenkman E.A. , Guo Y. .
Source: Cancers, 2023-10-31 00:00:00.0; 15(21), .
EPub date: 2023-10-31 00:00:00.0.
PMID: 37958400
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N6-methyladenosine in 7SK small nuclear RNA underlies RNA polymerase II transcription regulation.
Authors: Wang Y. , Traugot C.M. , Bubenik J.L. , Li T. , Sheng P. , Hiers N.M. , Fernandez P. , Li L. , Bian J. , Swanson M.S. , et al. .
Source: Molecular Cell, 2023-10-06 00:00:00.0; , .
EPub date: 2023-10-06 00:00:00.0.
PMID: 37820733
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N6-methyladenosine in 7SK small nuclear RNA underlies RNA polymerase II transcription regulation.
Authors: Wang Y. , Traugot C.M. , Bubenik J.L. , Li T. , Sheng P. , Hiers N.M. , Fernandez P. , Li L. , Bian J. , Swanson M.S. , et al. .
Source: Molecular Cell, 2023-10-06 00:00:00.0; , .
EPub date: 2023-10-06 00:00:00.0.
PMID: 37820733
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Lung cancer screening adherence among people living with and without HIV: An analysis of an integrated health system in Florida, United States (2012-2021).
Authors: Islam J.Y. , Yang S. , Schabath M. , Vadaparampil S.T. , Lou X. , Wu Y. , Bian J. , Guo Y. .
Source: Preventive Medicine Reports, 2023 Oct; 35, p. 102334.
EPub date: 2023-07-21 00:00:00.0.
PMID: 37546581
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Lung Cancer Screening Adherence Among People with HIV Treated at an Integrated Health System in Florida.
Authors: Islam J.Y. , Yang S. , Schabath M. , Vadaparampil S.T. , Lou X. , Wu Y. , Bian J. , Guo Y. .
Source: Aids Research And Human Retroviruses, 2023 Sep; 39(9), p. 482-484.
EPub date: 2023-06-22 00:00:00.0.
PMID: 37132600
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Clinical concept and relation extraction using prompt-based machine reading comprehension.
Authors: Peng C. , Yang X. , Yu Z. , Bian J. , Hogan W.R. , Wu Y. .
Source: Journal Of The American Medical Informatics Association : Jamia, 2023-08-18 00:00:00.0; 30(9), p. 1486-1493.
PMID: 37316988
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Enriching Real-world Data with Social Determinants of Health for Health Outcomes and Health Equity: Successes, Challenges, and Opportunities.
Authors: He Z. , Pfaff E. , Guo S.J. , Guo Y. , Wu Y. , Tao C. , Stiglic G. , Bian J. .
Source: Yearbook Of Medical Informatics, 2023 Aug; 32(1), p. 253-263.
EPub date: 2023-12-26 00:00:00.0.
PMID: 38147867
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Contextualized medication information extraction using Transformer-based deep learning architectures.
Authors: Chen A. , Yu Z. , Yang X. , Guo Y. , Bian J. , Wu Y. .
Source: Journal Of Biomedical Informatics, 2023 Jun; 142, p. 104370.
EPub date: 2023-04-24 00:00:00.0.
PMID: 37100106
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Early prediction of Alzheimer's disease and related dementias using real-world electronic health records.
Authors: Li Q. , Yang X. , Xu J. , Guo Y. , He X. , Hu H. , Lyu T. , Marra D. , Miller A. , Smith G. , et al. .
Source: Alzheimer's & Dementia : The Journal Of The Alzheimer's Association, 2023-02-23 00:00:00.0; , .
EPub date: 2023-02-23 00:00:00.0.
PMID: 36815661
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Algorithmic fairness in computational medicine.
Authors: Xu J. , Xiao Y. , Wang W.H. , Ning Y. , Shenkman E.A. , Bian J. , Wang F. .
Source: Ebiomedicine, 2022 Oct; 84, p. 104250.
EPub date: 2022-09-06 00:00:00.0.
PMID: 36084616
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The Impact of Race-Ethnicity and Diagnosis of Alzheimer's Disease and Related Dementias on Mammography Use.
Authors: Chen A. , Li Y. , Woodard J.N. , Islam J.Y. , Yang S. , George T.J. , Shenkman E.A. , Bian J. , Guo Y. .
Source: Cancers, 2022-09-28 00:00:00.0; 14(19), .
EPub date: 2022-09-28 00:00:00.0.
PMID: 36230648
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Incidence Trends of New-Onset Diabetes in Children and Adolescents Before and During the COVID-19 Pandemic: Findings from Florida.
Authors: Guo Y. , Bian J. , Chen A. , Wang F. , Posgai A.L. , Schatz D.A. , Shenkman E.A. , Atkinson M.A. .
Source: Diabetes, 2022-09-12 00:00:00.0; , .
EPub date: 2022-09-12 00:00:00.0.
PMID: 36094294
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Distributed Quasi-Poisson regression algorithm for modeling multi-site count outcomes in distributed data networks.
Authors: Edmondson M.J. , Luo C. , Nazmul Islam M. , Sheils N.E. , Buresh J. , Chen Z. , Bian J. , Chen Y. .
Source: Journal Of Biomedical Informatics, 2022 07; 131, p. 104097.
EPub date: 2022-05-25 00:00:00.0.
PMID: 35643272
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Simulating Colorectal Cancer Trials Using Real-World Data.
Authors: Chen Z. , Zhang H. , George T.J. , Guo Y. , Prosperi M. , Guo J. , Braithwaite D. , Wang F. , Kibbe W. , Wagner L. , et al. .
Source: Jco Clinical Cancer Informatics, 2022 07; 6, p. e2100195.
PMID: 35839432
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Protocol for the development of a reporting guideline for causal and counterfactual prediction models in biomedicine.
Authors: Xu J. , Guo Y. , Wang F. , Xu H. , Lucero R. , Bian J. , Prosperi M. .
Source: Bmj Open, 2022-06-20 00:00:00.0; 12(6), p. e059715.
EPub date: 2022-06-20 00:00:00.0.
PMID: 35725267
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A Preliminary Study of Extracting Pulmonary Nodules and Nodule Characteristics from Radiology Reports Using Natural Language Processing.
Authors: Yang S. , Yang X. , Lyu T. , He X. , Braithwaite D. , Mehta H.J. , Guo Y. , Wu Y. , Bian J. .
Source: Ieee International Conference On Healthcare Informatics. Ieee International Conference On Healthcare Informatics, 2022 Jun; 2022, p. 618-619.
EPub date: 2022-09-08 00:00:00.0.
PMID: 36168559
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Prevalence of Alzheimer's and Related Dementia Diseases and Risk Factors Among Transgender Adults, Florida, 2012‒2020.
Authors: Guo Y. , Li Q. , Yang X. , Jaffee M.S. , Wu Y. , Wang F. , Bian J. .
Source: American Journal Of Public Health, 2022 May; 112(5), p. 754-757.
EPub date: 2022-03-24 00:00:00.0.
PMID: 35324265
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Procedural complications associated with invasive diagnostic procedures after lung cancer screening with low-dose computed tomography.
Authors: Yang S. , Shih Y.T. , Huo J. , Mehta H.J. , Wu Y. , Salloum R.G. , Alvarado M. , Zhang D. , Braithwaite D. , Guo Y. , et al. .
Source: Lung Cancer (amsterdam, Netherlands), 2022-01-04 00:00:00.0; 165, p. 141-144.
EPub date: 2022-01-04 00:00:00.0.
PMID: 35124410
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Expansion of Guideline-Recommended Lung Cancer Screening Eligibility: Implications for Health Equity of Joint Screening and Cessation Interventions.
Authors: Salloum R.G. , Braithwaite D. .
Source: Journal Of Thoracic Oncology : Official Publication Of The International Association For The Study Of Lung Cancer, 2022 01; 17(1), p. 13-15.
PMID: 34930605
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Assessing the Documentation of Social Determinants of Health for Lung Cancer Patients in Clinical Narratives.
Authors: Yu Z. , Yang X. , Guo Y. , Bian J. , Wu Y. .
Source: Frontiers In Public Health, 2022; 10, p. 778463.
EPub date: 2022-03-28 00:00:00.0.
PMID: 35419333
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Effects of brief exposure to misinformation about e-cigarette harms on Twitter on knowledge and perceptions of e-cigarettes.
Authors: Liu J. , Wright C. , Elizarova O. , Dahne J. , Bian J. , Williams P. , Zulkiewicz B. , Tan A.S. .
Source: Digital Health, 2022 Jan-Dec; 8, p. 20552076221116780.
EPub date: 2022-08-02 00:00:00.0.
PMID: 35935711
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Smokers' Likelihood to Engage With Information and Misinformation on Twitter About the Relative Harms of e-Cigarette Use: Results From a Randomized Controlled Trial.
Authors: Liu J. , Wright C. , Williams P. , Elizarova O. , Dahne J. , Bian J. , Zhao Y. , Tan A.S.L. .
Source: Jmir Public Health And Surveillance, 2021-12-21 00:00:00.0; 7(12), p. e27183.
EPub date: 2021-12-21 00:00:00.0.
PMID: 34931999
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Sequencing of Argonaute-bound microRNA/mRNA hybrids reveals regulation of the unfolded protein response by microRNA-320a.
Authors: Fields C.J. , Li L. , Hiers N.M. , Li T. , Sheng P. , Huda T. , Shan J. , Gay L. , Gu T. , Bian J. , et al. .
Source: Plos Genetics, 2021 Dec; 17(12), p. e1009934.
EPub date: 2021-12-16 00:00:00.0.
PMID: 34914716
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Emotional Responses and Perceived Relative Harm Mediate the Effect of Exposure to Misinformation about E-Cigarettes on Twitter and Intention to Purchase E-Cigarettes among Adult Smokers.
Authors: Liu J. , Wright C. , Elizarova O. , Dahne J. , Bian J. , Tan A.S.L. .
Source: International Journal Of Environmental Research And Public Health, 2021-11-24 00:00:00.0; 18(23), .
EPub date: 2021-11-24 00:00:00.0.
PMID: 34886071
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An efficient and accurate distributed learning algorithm for modeling multi-site zero-inflated count outcomes.
Authors: Edmondson M.J. , Luo C. , Duan R. , Maltenfort M. , Chen Z. , Locke K. , Shults J. , Bian J. , Ryan P.B. , Forrest C.B. , et al. .
Source: Scientific Reports, 2021-10-04 00:00:00.0; 11(1), p. 19647.
EPub date: 2021-10-04 00:00:00.0.
PMID: 34608222
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Challenges in replicating secondary analysis of electronic health records data with multiple computable phenotypes: A case study on methicillin-resistant Staphylococcus aureus bacteremia infections.
Authors: Jun I. , Rich S.N. , Chen Z. , Bian J. , Prosperi M. .
Source: International Journal Of Medical Informatics, 2021 09; 153, p. 104531.
EPub date: 2021-07-16 00:00:00.0.
PMID: 34332468
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Optimizing Identification of People Living with HIV from Electronic Medical Records: Computable Phenotype Development and Validation.
Authors: Liu Y. , Siddiqi K.A. , Cook R.L. , Bian J. , Squires P.J. , Shenkman E.A. , Prosperi M. , Jayaweera D.T. .
Source: Methods Of Information In Medicine, 2021 09; 60(3-04), p. 84-94.
EPub date: 2021-09-30 00:00:00.0.
PMID: 34592777
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Comparing the downstream costs and healthcare utilization associated with the use of low-dose computed tomography (LDCT) in lung cancer screening in patients with and without alzheimer's disease and related dementias (ADRD).
Authors: Zhang Y. , Bian J. , Huo J. , Yang S. , Guo Y. , Shao H. .
Source: Current Medical Research And Opinion, 2021-07-26 00:00:00.0; , p. 1-7.
EPub date: 2021-07-26 00:00:00.0.
PMID: 34252317
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The role of sex and rurality in cancer fatalistic beliefs and cancer screening utilization in Florida.
Authors: Guo Y. , Szurek S.M. , Bian J. , Braithwaite D. , Licht J.D. , Shenkman E.A. .
Source: Cancer Medicine, 2021-07-13 00:00:00.0; , .
EPub date: 2021-07-13 00:00:00.0.
PMID: 34254469
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The application of artificial intelligence and data integration in COVID-19 studies: a scoping review.
Authors: Guo Y. , Zhang Y. , Lyu T. , Prosperi M. , Wang F. , Xu H. , Bian J. .
Source: Journal Of The American Medical Informatics Association : Jamia, 2021-06-21 00:00:00.0; , .
EPub date: 2021-06-21 00:00:00.0.
PMID: 34151987
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The association between cognitive impairment and breast and colorectal cancer screening utilization.
Authors: Yang S. , Bian J. , George T.J. , Daily K. , Zhang D. , Braithwaite D. , Guo Y. .
Source: Bmc Cancer, 2021-05-12 00:00:00.0; 21(1), p. 539.
EPub date: 2021-05-12 00:00:00.0.
PMID: 33975576
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Causal AI with Real World Data: Do Statins Protect from Alzheimer's Disease Onset?
Authors: Prosperi M. , Salemi M. , Ghosh S. , Lyu T. , Bian J. , Chen Z. , Zhao J. .
Source: Icmhi 2021 : 2021 5th International Conference On Medical And Health Informatics : May 14-16, 2021, Kyoto, Japan. International Conference On Medical And Health Informatics (5th : 2021 : Online), 2021 May; 2021, p. 296-303.
EPub date: 2021-10-26 00:00:00.0.
PMID: 37954527
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Oral cancer knowledge and screening behavior among smokers and non-smokers in rural communities.
Authors: Wong T.J. , Li Q. , Dodd V. , Wang W. , Bian J. , Guo Y. .
Source: Bmc Cancer, 2021-04-20 00:00:00.0; 21(1), p. 430.
EPub date: 2021-04-20 00:00:00.0.
PMID: 33879128
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Deep propensity network using a sparse autoencoder for estimation of treatment effects.
Authors: Ghosh S. , Bian J. , Guo Y. , Prosperi M. .
Source: Journal Of The American Medical Informatics Association : Jamia, 2021-02-16 00:00:00.0; , .
EPub date: 2021-02-16 00:00:00.0.
PMID: 33594415
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Bagged random causal networks for interventional queries on observational biomedical datasets.
Authors: Prosperi M. , Guo Y. , Bian J. .
Source: Journal Of Biomedical Informatics, 2021-02-04 00:00:00.0; 115, p. 103689.
EPub date: 2021-02-04 00:00:00.0.
PMID: 33548542
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When text simplification is not enough: could a graph-based visualization facilitate consumers' comprehension of dietary supplement information?
Authors: He X. , Zhang R. , Alpert J. , Zhou S. , Adam T.J. , Raisa A. , Peng Y. , Zhang H. , Guo Y. , Bian J. .
Source: Jamia Open, 2021 Jan; 4(1), p. ooab026.
EPub date: 2021-04-04 00:00:00.0.
PMID: 33855274
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Propensity score synthetic augmentation matching using generative adversarial networks (PSSAM-GAN).
Authors: Ghosh S. , Boucher C. , Bian J. , Prosperi M. .
Source: Computer Methods And Programs In Biomedicine Update, 2021; 1, .
EPub date: 2021-07-16 00:00:00.0.
PMID: 34386786
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Validation of Real-World Data-based Endpoint Measures of Cancer Treatment Outcomes.
Authors: Li Q. , Zhang H. , Chen Z. , Guo Y. , George T.J. , Chen Y. , Wang F. , Bian J. .
Source: Amia ... Annual Symposium Proceedings. Amia Symposium, 2021; 2021, p. 716-725.
EPub date: 2022-02-21 00:00:00.0.
PMID: 35308944
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A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models.
Authors: Yu Z. , Yang X. , Dang C. , Wu S. , Adekkanattu P. , Pathak J. , George T.J. , Hogan W.R. , Guo Y. , Bian J. , et al. .
Source: Amia ... Annual Symposium Proceedings. Amia Symposium, 2021; 2021, p. 1225-1233.
EPub date: 2022-02-21 00:00:00.0.
PMID: 35309014
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International Classification of Diseases, Tenth Revision, Clinical Modification social determinants of health codes are poorly used in electronic health records.
Authors: Guo Y. , Chen Z. , Xu K. , George T.J. , Wu Y. , Hogan W. , Shenkman E.A. , Bian J. .
Source: Medicine, 2020-12-24 00:00:00.0; 99(52), p. e23818.
PMID: 33350768
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