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Grant Details

Grant Number: 1R21CA245858-01A1 Interpret this number
Primary Investigator: Guo, Yi
Organization: University Of Florida
Project Title: Using Electronic Health Records From a Large Clinical Data Research Network to Understand Cancer Burden and Cancer Risks Among Transgender and Gender Nonconforming (TGNC) Individuals
Fiscal Year: 2020


Abstract

ABSTRACT Transgender and gender nonconforming (TGNC) people face a disproportionate burden of adverse health outcomes. Although there is a growing body of literature on the unique health issues among TGNC populations, they remain severely underserved as existing data on TGNC health are scarce. Under-reporting is common due to issues related to social and economic marginalization, stigma, and discrimination, leading to challenges in obtaining population-based estimates since TGNC individuals are often unwilling to self-identify and reluctant to participate in traditional surveys. Further, past TGNC research has primarily focused on mental health, substance use and abuse, and sexual transmitted infections and diseases. There is limited data available on age-related chronic conditions such as cancer, the second leading cause of death in the United States. Nonetheless, cancer is one of the top research priorities among the TGNC population. With a rapidly growing aging TGNC population, there is an urgent need to characterize the cancer burden among these individuals and understand how cancer impact them differentially compared to non-TGNC individuals. On the other hand, rapid adoption of electronic health record (EHR) systems has made longitudinal clinical data available for research. EHRs contain not only important structured data, such as demographics, diagnoses, procedures, and medications, but also unstructured clinical narratives such as physician’s notes. More than 80 percent of the clinical information is documented in clinical narratives, which contain more detailed patient information including gender identity and cancer risk factors. Motivated by these observations and built upon our previous studies on 1) the adequacy of TGNC gender identity terms, 2) clinical natural language processing methods for information extraction, and 3) EHR-based cohort studies, we propose to conduct a population-based cohort analysis to examine the cancer burden and risk factors among TGNC people using a unique data source from a large network of EHRs—OneFlorida, one of the 13 PCORI-funded clinical data research networks (CDRNs) contributing to the PCORnet. Using both structured and unstructured OneFlorida data, we will first develop computable phenotypes to identify TGNC individuals and subsequently evaluate their cancer risk. Our research is significant because: 1) no population-based cohort studies on cancer risk have been conducted among the TGNC population. Our results will support the development of tailored, evidence- based cancer screening programs for TGNC people; 2) our research will create a cohort of TGNC people that can be not only tracked longitudinally in EHR but also recruited for future clinical studies; and 3) working with a PCORnet CDRN makes our analysis framework generalizable to the overall PCORNet. Overall, the proposed research will advance our knowledge in cancer among the aging TGNC population.



Publications

Evolution of digital twins in precision health applications: a scoping review study.
Authors: Huang Y. , Dai H. , Xu J. , Wei R. , Sun L. , Guo Y. , Guo J. , Bian J. .
Source: Research Square, 2024-08-07 00:00:00.0; , .
EPub date: 2024-08-07 00:00:00.0.
PMID: 39149471
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Identifying social determinants of health from clinical narratives: A study of performance, documentation ratio, and potential bias.
Authors: Yu Z. , Peng C. , Yang X. , Dang C. , Adekkanattu P. , Gopal Patra B. , Peng Y. , Pathak J. , Wilson D.L. , Chang C.Y. , et al. .
Source: Journal Of Biomedical Informatics, 2024-04-14 00:00:00.0; 153, p. 104642.
EPub date: 2024-04-14 00:00:00.0.
PMID: 38621641
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The Burden of Cancer and Pre-cancerous Conditions Among Transgender Individuals in a Large Healthcare Network.
Authors: Yang S. , Li Y. , Wheldon C.W. , Prosperi M. , George T.J. , Shenkman E.A. , Wang F. , Bian J. , Guo Y. .
Source: Medrxiv : The Preprint Server For Health Sciences, 2024-03-26 00:00:00.0; , .
EPub date: 2024-03-26 00:00:00.0.
PMID: 38585849
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High-throughput target trial emulation for Alzheimer's disease drug repurposing with real-world data.
Authors: Zang C. , Zhang H. , Xu J. , Zhang H. , Fouladvand S. , Havaldar S. , Cheng F. , Chen K. , Chen Y. , Glicksberg B.S. , et al. .
Source: Nature Communications, 2023-12-11 00:00:00.0; 14(1), p. 8180.
EPub date: 2023-12-11 00:00:00.0.
PMID: 38081829
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Unraveling Racial Disparities in Supportive Care Medication Use among End-of-Life Pancreatic Cancer Patients: Focus on Pain Management and Psychiatric Therapies.
Authors: Allen J.M. , Awunti M. , Guo Y. , Bian J. , Rogers S.C. , Scarton L. , DeRemer D.L. , Wilkie D.J. .
Source: Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology, 2023-12-01 00:00:00.0; 32(12), p. 1675-1682.
PMID: 37788369
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Disparities Contributing to Late-Stage Diagnosis of Lung, Colorectal, Breast, and Cervical Cancers: Rural and Urban Poverty in Florida.
Authors: Hall J.M. , Mkuu R.S. , Cho H.D. , Woodard J.N. , Kaye F.J. , Bian J. , Shenkman E.A. , Guo Y. .
Source: Cancers, 2023-10-31 00:00:00.0; 15(21), .
EPub date: 2023-10-31 00:00:00.0.
PMID: 37958400
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Lung cancer screening adherence among people living with and without HIV: An analysis of an integrated health system in Florida, United States (2012-2021).
Authors: Islam J.Y. , Yang S. , Schabath M. , Vadaparampil S.T. , Lou X. , Wu Y. , Bian J. , Guo Y. .
Source: Preventive Medicine Reports, 2023 Oct; 35, p. 102334.
EPub date: 2023-07-21 00:00:00.0.
PMID: 37546581
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Lung Cancer Screening Adherence Among People with HIV Treated at an Integrated Health System in Florida.
Authors: Islam J.Y. , Yang S. , Schabath M. , Vadaparampil S.T. , Lou X. , Wu Y. , Bian J. , Guo Y. .
Source: Aids Research And Human Retroviruses, 2023 Sep; 39(9), p. 482-484.
EPub date: 2023-06-22 00:00:00.0.
PMID: 37132600
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Enriching Real-world Data with Social Determinants of Health for Health Outcomes and Health Equity: Successes, Challenges, and Opportunities.
Authors: He Z. , Pfaff E. , Guo S.J. , Guo Y. , Wu Y. , Tao C. , Stiglic G. , Bian J. .
Source: Yearbook Of Medical Informatics, 2023 Aug; 32(1), p. 253-263.
EPub date: 2023-12-26 00:00:00.0.
PMID: 38147867
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Contextualized medication information extraction using Transformer-based deep learning architectures.
Authors: Chen A. , Yu Z. , Yang X. , Guo Y. , Bian J. , Wu Y. .
Source: Journal Of Biomedical Informatics, 2023 Jun; 142, p. 104370.
EPub date: 2023-04-24 00:00:00.0.
PMID: 37100106
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Cancer incidence after asthma diagnosis: Evidence from a large clinical research network in the United States.
Authors: Guo Y. , Bian J. , Chen Z. , Fishe J.N. , Zhang D. , Braithwaite D. , George T.J. , Shenkman E.A. , Licht J.D. .
Source: Cancer Medicine, 2023 May; 12(10), p. 11871-11877.
EPub date: 2023-03-31 00:00:00.0.
PMID: 36999938
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A Computable Phenotype for the Identification of Sexual and Gender Minorities in Electronic Health Records.
Authors: Li Y. , He X. , Wheldon C. , Wu Y. , Prosperi M. , Shenkman E.A. , Jaffee M.S. , Guo J. , Wang F. , Guo Y. , et al. .
Source: Amia ... Annual Symposium Proceedings. Amia Symposium, 2023; 2023, p. 1057-1066.
EPub date: 2024-01-11 00:00:00.0.
PMID: 38222414
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Identification of Social and Racial Disparities in Risk of HIV Infection in Florida using Causal AI Methods.
Authors: Prosperi M. , Xu J. , Guo J.S. , Bian J. , Chen W.W. , Canidate S. , Marini S. , Wang M. .
Source: Proceedings. Ieee International Conference On Bioinformatics And Biomedicine, 2022 Dec; 2022, p. 2934-2939.
EPub date: 2023-01-02 00:00:00.0.
PMID: 36865610
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Algorithmic fairness in computational medicine.
Authors: Xu J. , Xiao Y. , Wang W.H. , Ning Y. , Shenkman E.A. , Bian J. , Wang F. .
Source: Ebiomedicine, 2022 Oct; 84, p. 104250.
EPub date: 2022-09-06 00:00:00.0.
PMID: 36084616
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Incidence Trends of New-Onset Diabetes in Children and Adolescents Before and During the COVID-19 Pandemic: Findings from Florida.
Authors: Guo Y. , Bian J. , Chen A. , Wang F. , Posgai A.L. , Schatz D.A. , Shenkman E.A. , Atkinson M.A. .
Source: Diabetes, 2022-09-12 00:00:00.0; , .
EPub date: 2022-09-12 00:00:00.0.
PMID: 36094294
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Protocol for the development of a reporting guideline for causal and counterfactual prediction models in biomedicine.
Authors: Xu J. , Guo Y. , Wang F. , Xu H. , Lucero R. , Bian J. , Prosperi M. .
Source: Bmj Open, 2022-06-20 00:00:00.0; 12(6), p. e059715.
EPub date: 2022-06-20 00:00:00.0.
PMID: 35725267
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A Preliminary Study of Extracting Pulmonary Nodules and Nodule Characteristics from Radiology Reports Using Natural Language Processing.
Authors: Yang S. , Yang X. , Lyu T. , He X. , Braithwaite D. , Mehta H.J. , Guo Y. , Wu Y. , Bian J. .
Source: Ieee International Conference On Healthcare Informatics. Ieee International Conference On Healthcare Informatics, 2022 Jun; 2022, p. 618-619.
EPub date: 2022-09-08 00:00:00.0.
PMID: 36168559
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Prevalence of Alzheimer's and Related Dementia Diseases and Risk Factors Among Transgender Adults, Florida, 2012‒2020.
Authors: Guo Y. , Li Q. , Yang X. , Jaffee M.S. , Wu Y. , Wang F. , Bian J. .
Source: American Journal Of Public Health, 2022 May; 112(5), p. 754-757.
EPub date: 2022-03-24 00:00:00.0.
PMID: 35324265
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Procedural complications associated with invasive diagnostic procedures after lung cancer screening with low-dose computed tomography.
Authors: Yang S. , Shih Y.T. , Huo J. , Mehta H.J. , Wu Y. , Salloum R.G. , Alvarado M. , Zhang D. , Braithwaite D. , Guo Y. , et al. .
Source: Lung Cancer (amsterdam, Netherlands), 2022-01-04 00:00:00.0; 165, p. 141-144.
EPub date: 2022-01-04 00:00:00.0.
PMID: 35124410
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Editorial: Measuring and Analysing Social Determinants of Health in the Era of Big Data.
Authors: Guo Y. , Bian J. , Wang F. .
Source: Frontiers In Public Health, 2022; 10, p. 902942.
EPub date: 2022-05-27 00:00:00.0.
PMID: 35712296
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DR-VIDAL - Doubly Robust Variational Information-theoretic Deep Adversarial Learning for Counterfactual Prediction and Treatment Effect Estimation on Real World Data.
Authors: Ghosh S. , Feng Z. , Bian J. , Butler K. , Prosperi M. .
Source: Amia ... Annual Symposium Proceedings. Amia Symposium, 2022; 2022, p. 485-494.
EPub date: 2023-04-29 00:00:00.0.
PMID: 37128454
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Challenges in replicating secondary analysis of electronic health records data with multiple computable phenotypes: A case study on methicillin-resistant Staphylococcus aureus bacteremia infections.
Authors: Jun I. , Rich S.N. , Chen Z. , Bian J. , Prosperi M. .
Source: International Journal Of Medical Informatics, 2021 09; 153, p. 104531.
EPub date: 2021-07-16 00:00:00.0.
PMID: 34332468
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Comparing the downstream costs and healthcare utilization associated with the use of low-dose computed tomography (LDCT) in lung cancer screening in patients with and without alzheimer's disease and related dementias (ADRD).
Authors: Zhang Y. , Bian J. , Huo J. , Yang S. , Guo Y. , Shao H. .
Source: Current Medical Research And Opinion, 2021-07-26 00:00:00.0; , p. 1-7.
EPub date: 2021-07-26 00:00:00.0.
PMID: 34252317
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The role of sex and rurality in cancer fatalistic beliefs and cancer screening utilization in Florida.
Authors: Guo Y. , Szurek S.M. , Bian J. , Braithwaite D. , Licht J.D. , Shenkman E.A. .
Source: Cancer Medicine, 2021-07-13 00:00:00.0; , .
EPub date: 2021-07-13 00:00:00.0.
PMID: 34254469
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The application of artificial intelligence and data integration in COVID-19 studies: a scoping review.
Authors: Guo Y. , Zhang Y. , Lyu T. , Prosperi M. , Wang F. , Xu H. , Bian J. .
Source: Journal Of The American Medical Informatics Association : Jamia, 2021-06-21 00:00:00.0; , .
EPub date: 2021-06-21 00:00:00.0.
PMID: 34151987
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The association between cognitive impairment and breast and colorectal cancer screening utilization.
Authors: Yang S. , Bian J. , George T.J. , Daily K. , Zhang D. , Braithwaite D. , Guo Y. .
Source: Bmc Cancer, 2021-05-12 00:00:00.0; 21(1), p. 539.
EPub date: 2021-05-12 00:00:00.0.
PMID: 33975576
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Causal AI with Real World Data: Do Statins Protect from Alzheimer's Disease Onset?
Authors: Prosperi M. , Salemi M. , Ghosh S. , Lyu T. , Bian J. , Chen Z. , Zhao J. .
Source: Icmhi 2021 : 2021 5th International Conference On Medical And Health Informatics : May 14-16, 2021, Kyoto, Japan. International Conference On Medical And Health Informatics (5th : 2021 : Online), 2021 May; 2021, p. 296-303.
EPub date: 2021-10-26 00:00:00.0.
PMID: 37954527
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Oral cancer knowledge and screening behavior among smokers and non-smokers in rural communities.
Authors: Wong T.J. , Li Q. , Dodd V. , Wang W. , Bian J. , Guo Y. .
Source: Bmc Cancer, 2021-04-20 00:00:00.0; 21(1), p. 430.
EPub date: 2021-04-20 00:00:00.0.
PMID: 33879128
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Deep propensity network using a sparse autoencoder for estimation of treatment effects.
Authors: Ghosh S. , Bian J. , Guo Y. , Prosperi M. .
Source: Journal Of The American Medical Informatics Association : Jamia, 2021-02-16 00:00:00.0; , .
EPub date: 2021-02-16 00:00:00.0.
PMID: 33594415
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Propensity score synthetic augmentation matching using generative adversarial networks (PSSAM-GAN).
Authors: Ghosh S. , Boucher C. , Bian J. , Prosperi M. .
Source: Computer Methods And Programs In Biomedicine Update, 2021; 1, .
EPub date: 2021-07-16 00:00:00.0.
PMID: 34386786
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Validation of Real-World Data-based Endpoint Measures of Cancer Treatment Outcomes.
Authors: Li Q. , Zhang H. , Chen Z. , Guo Y. , George T.J. , Chen Y. , Wang F. , Bian J. .
Source: Amia ... Annual Symposium Proceedings. Amia Symposium, 2021; 2021, p. 716-725.
EPub date: 2022-02-21 00:00:00.0.
PMID: 35308944
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International Classification of Diseases, Tenth Revision, Clinical Modification social determinants of health codes are poorly used in electronic health records.
Authors: Guo Y. , Chen Z. , Xu K. , George T.J. , Wu Y. , Hogan W. , Shenkman E.A. , Bian J. .
Source: Medicine, 2020-12-24 00:00:00.0; 99(52), p. e23818.
PMID: 33350768
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Applications of artificial intelligence in drug development using real-world data.
Authors: Chen Z. , Liu X. , Hogan W. , Shenkman E. , Bian J. .
Source: Drug Discovery Today, 2020-12-24 00:00:00.0; , .
EPub date: 2020-12-24 00:00:00.0.
PMID: 33358699
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Statin Use for Atherosclerotic Cardiovascular Disease Prevention Among Sexual Minority Adults.
Authors: Guo Y. , Wheldon C.W. , Shao H. , Pepine C.J. , Handberg E.M. , Shenkman E.A. , Bian J. .
Source: Journal Of The American Heart Association, 2020-12-15 00:00:00.0; 9(24), p. e018233.
EPub date: 2020-12-02 00:00:00.0.
PMID: 33317368
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An ontology-based documentation of data discovery and integration process in cancer outcomes research.
Authors: Zhang H. , Guo Y. , Prosperi M. , Bian J. .
Source: Bmc Medical Informatics And Decision Making, 2020-12-14 00:00:00.0; 20(Suppl 4), p. 292.
EPub date: 2020-12-14 00:00:00.0.
PMID: 33317497
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Geographic Variation in Knowledge of Palliative Care Among US Adults: Findings From 2018 Health Information National Trends Survey.
Authors: Chen G. , Hong Y.R. , Wilkie D.J. , Kittleson S. , Huo J. , Bian J. .
Source: The American Journal Of Hospice & Palliative Care, 2020-08-06 00:00:00.0; , p. 1049909120946266.
EPub date: 2020-08-06 00:00:00.0.
PMID: 32757758
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Developing and Validating a Computable Phenotype for the Identification of Transgender and Gender Nonconforming Individuals and Subgroups.
Authors: Guo Y. , He X. , Lyu T. , Zhang H. , Wu Y. , Yang X. , Chen Z. , Markham M.J. , Modave F. , Xie M. , et al. .
Source: Amia ... Annual Symposium Proceedings. Amia Symposium, 2020; 2020, p. 514-523.
EPub date: 2021-01-25 00:00:00.0.
PMID: 33936425
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Temporal biomedical data analytics.
Authors: Moskovitch R. , Shahar Y. , Wang F. , Hripcsak G. .
Source: Journal Of Biomedical Informatics, 2019 Feb; 90, p. 103092.
EPub date: 2019-01-14 00:00:00.0.
PMID: 30654029
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